PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006441t1
Common NameTCM_006441
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Trihelix
Protein Properties Length: 448aa    MW: 50575.2 Da    PI: 5.7361
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006441t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.33.6e-2287181183
          trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                       +Wt ++v++Li++ ++++e+ ++++           +k ++W+ vsk+m erg+++sp+qC++k++nlnk y+++++  +++ +++++++ ++
  Thecc1EG006441t1  87 KWTGKMVKLLITILSYIGEDPSTDCvgsqrkmssllRKLGKWKCVSKVMVERGYHVSPQQCEDKFNNLNKTYRRLNDLLGRGtSCKVVENPKL 179
                       7**********************988889999999999*******************************************955888888777 PP

          trihelix  82 fd 83 
                       +d
  Thecc1EG006441t1 180 LD 181
                       65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-1985209No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEGQPSPGGK MLQGRDYGCQ DLQGSMKPSH EQKPCMFELP PVSGLVENEG HENMVIEDDV  60
TNYAEQGTLE HNEVGKSEDG SPWQRMKWTG KMVKLLITIL SYIGEDPSTD CVGSQRKMSS  120
LLRKLGKWKC VSKVMVERGY HVSPQQCEDK FNNLNKTYRR LNDLLGRGTS CKVVENPKLL  180
DIIDLSEKGK EDVRKILTSK HLFFEEMCSY HNGNRLYLPH DPDLLQCLLL ILKNENDNEL  240
YDLSQPGLYG IDKKAGVLAE GDAAEDSGAT SGFPAFSARL RLTNENEIAG FGNTSKSLDS  300
NQTLDDQGDL AEYNGTNSGF SAVSAMWLKQ TNENQAAGLG NPLKPWDCNQ NSDAQPLYNF  360
AHQNLSCPEG NEADRSQNQQ MAYRMYQLEM QKLQLKSKML KLEKQRFKWQ CNSLKQDMEV  420
DRMRMENKCL KLGNECIAME LKQRRIN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007041596.10.0Uncharacterized protein TCM_006441
TrEMBLA0A061DYC50.0A0A061DYC5_THECC; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2214945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-68sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]